Biomarker | Biological matrix | Method of analysis | Notes |
---|---|---|---|
Nucleic acids e.g. 8-oxodG, 8-oxoGuo | Urine Requires correction for variation in urine concentration/output e.g. 24 h collections, or correction for creatinine, or specific gravity | ELISA | The literature reports both in-house, and commercially available ELISAs, typically for the (semi-)quantification of 8-oxodG Advantages assay is simple to use, little sample work-up, high throughput, kits, and associated equipment cheaper than HPLC–MS/MS Disadvantages lack of absolute quantification, and internal standardisation; generally, the ELISA approach over-estimates, compared to HPLC–MS/MS; potential lack of specificity; limited to one analyte per kit |
HPLC–MS/MS | Considered to be the gold standard approach Advantages absolute quantification, use of stable isotopically-labelled internal standards account for target loss during sample workup, and matrix effects; multiple (> 1) analytes can be analysed simultaneously e.g. 8-oxodG and 8-oxoGuo Disadvantages cost—initial cost of equipment, service contracts, requires specialist training for operator; may occupy considerable laboratory space | ||
HPLC-ECD | Rarely reported in the literature, as it has largely been replaced by LC–MS/MS Advantages more specific than ELISA, Disadvantages lacks internal standardization—less accurate than HPLC–MS/MS; analytes must be electrochemically active e.g. 8-oxodG | ||
Blood: whole blood, serum, or plasma if aiming to study a nucleic acid-derived biomarker of oxidative stress in serum or plasma of these matrices, it is worth considering using urine instead, as it possesses the advantage of being entirely non-invasive | ELISA | Advantages as above, for urine Disadvantages as above, for urine | |
HPLC–MS/MS | Advantages as above, for urine Disadvantages as above, for urine | ||
Comet assay—whole blood | Advantages as little as 5 µL of whole blood contains sufficient cells for use in the comet assay; this blood can be added to a gel with no workup, no isolation of peripheral blood mononuclear cells; minimally invasive (a pin-prick of blood from a lancet provides sufficient blood). Can detect double-, and single-strand breaks (at neutral pH), plus alkali-labile sites at alkali pH. Use of DNA repair enzymes can provide specificity for certain nucleobase lesions, although their precise substrate specificity may not be known) Disadvantages semi-quantitative, unless calibration is used; precise nature of lesions undefined | ||
Solid issue generally, obtaining tissue is necessarily invasive | ELISA | Advantages as above, for urine Disadvantages requires DNA extraction with attendant risk of artefact; extracted DNA may be applied to the ELISA, but quantification not possible as the polymeric DNA is not in the same structural form as the external calibration curve (the free modified 2′-deoxyribonucleoside, 8-oxodG) | |
HPLC–MS/MS | Advantages as above, for urine Disadvantages requires DNA extraction with attendant risk of artefact; DNA requires hydrolysis to 2′-deoxyribonucleosides—risk on incomplete hydrolysis, and artefact formation; | ||
HPLC-ECD | Advantages as above, for urine Disadvantages requires DNA extraction with attendant risk of artefact; DNA requires hydrolysis to 2′-deoxyribonucleosides—risk on incomplete hydrolysis, and artefact formation; | ||
Comet assay | Advantages does not require DNA extraction, and hydrolysis Disadvantages requires a single cell suspension to be generated from the tissue | ||
Immunohisto/cytochemistry | Advantages provides localisation of damage within tissues/cells Disadvantages at best semi-quantitative; protocols can be challenging e.g. immunohistochemistry for 8-oxodG | ||
Lipids e.g. malondialdehyde (MDA), 4-hydroxy-2-nonenal (HNE), F2-isoprostanes (F2-IsoPs) | Urine requires correction for variation in urine concentration/output e.g. 24 h collections, or correction for creatinine, or specific gravity | ELISA | Advantages assay is simple to use, little sample work-up, high throughput, kits, and associated equipment cheaper than HPLC–MS/MS Disadvantages antibody-based methods do not compare well with mass spectrometric methods |
HPLC–MS/MS | HPLC–MS/MS is considered the gold standard method for the analysis of isoprostanes, specifically 8-iso-IPF2α Advantages absolute quantification, use of stable isotopically-labelled internal standards account for target loss during sample workup, and matrix effects; multiple (> 1) analytes can be analysed simultaneously Disadvantages cost—initial cost of equipment, service contracts, requires specialist training for operator; may occupy considerable laboratory space. Artefactual formation of isoprostanes occurs during sample storage at − 20 °C, but can be prevented for up to six months by storage at − 80 °C, or addition of a preservative, such as butylated hydroxytoluene | ||
HPLC–UV | HNE can be quantified either directly, of following derivatisation with 2,4-dinitrophenylhydrazine (DNPH) Advantages a relatively simple assay Disadvantages lacks sensitivity | ||
HPLC-fluorescence | The thiobarbituric acid reactive substances (TBARS) assay is often described as detecting MDA (although alkenals and alkadienals are also TBARS), however, HPLC with fluorescence detection is required in order to identify and quantify the MDA-TBA adduct, and discriminate from all the TBA-reactive substances (e.g. sugars, amino acids, bilirubin, and albumin) that are otherwise detected colorimetrically Advantages provides specificity for MDA-TBA adduct impossible with the simple colorimetric assay (which is often marketed commercially as a test for lipid peroxidation or MDA) Disadvantages lack of internal standardisation; calibration curve with authentic MDA standard cannot be generated due to instability of MDA; dietary intake of fatty acids influences MDA levels; MDA is a by-product of prostaglandin synthesis | ||
Blood whole blood, serum, or plasma | HPLC-fluorescence | See above for MDA measurement in urine Advantages provides specificity for MDA-TBA adduct impossible with the simple colorimetric assay (which is often marketed commercially as a test for lipid peroxidation or MDA) Disadvantages invasive; also see urine | |
HPLC–MS/MS | Half-life of isoprostanes in plasma is ~ 18 min, this is circumvented by measuring 2,3-dinor 8-iso-PGF1a, the metabolite of iso-PFG2α Advantages see urine Disadvantages see urine | ||
GC–MS | HNE can be quantified following derivatisation with 1,3-cyclohexanedione Advantages specific, sensitive, absolute quantification. Potential for use of stable isotope internal standards, to improve quantification, and account for matrix effects Disadvantages F2-IsoPs and MDA results can be affected by sample haemolysis | ||
Solid tissue | Schiff’s reaction | Advantages localisation of aldehydes within a tissue Disadvantages questionable specificity for lipid peroxidation-derived aldehydes | |
GC–MS | Advantages sensitive and specific for isoprostanes Disadvantages isoprostanes require extraction from tissue, and then derivatisation, adding to run time | ||
Proteins e.g. protein carbonyls, bityrosine, L-DOPA, ortho-tyrosine | Urine requires correction for variation in urine concentration/output e.g. 24 h collections, or correction for creatinine, or specific gravity | ELISA | Several antibodies exist for the protein carbonyl-DNPH conjugate, and can be applied semi-quantitatively to ELISA, or Western blotting (after 1 or 2D electrophoresis) Advantages assay is simple to use, little sample work-up, high throughput, kits, and associated equipment cheaper than HPLC–MS/MS. Sensitive, small sample volume, reproducible, and large sample throughput Disadvantages relies upon specificity of the primary antibody; semi-quantitative |
HPLC–MS/MS | e.g. bityrosine Advantages: sensitive and specific quantification Disadvantages see above for lipids. May require derivatization with DNPH followed by solid phase extraction | ||
HPLC with fluorescence detection (protein carbonyls), or chemiluminescence (protein hydroperoxides) | Advantages provides specificity for protein carbonyl-dinitrophenyl hydrazine conjugate, which is impossible with the simple colorimetric assay Disadvantages risk of protein oxidation during sample work-up; lack of internal standardisation | ||
Blood plasma/serum | ELISA | See above for urine | |
HPLC–MS/MS | See above for urine | ||
HPLC with fluorescence detection (protein carbonyls), or chemiluminescence (protein hydroperoxides) | See above for urine | ||
Colorimetric assay | Requires sample to be derivatized with DNPH prior to spectrophotometric measurement Advantages low cost Disadvantages does not provide any information on which protein has been oxidised | ||
Solid tissue Generally, obtaining tissue is necessarily invasive | Histochemistry | Blood (plasma/serum), and urine are the preferred matrices | |
Protein carbonyls are derivatised with 2,4-DNP, the resulting 2,4-dinitrophenyl hydrazine then detected by a commercial anti-DNP antiserum Advantages localisation of protein oxidation within a tissue Disadvantages does not provide any information on which protein has been oxidised |
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